CDB25:0004564 Pcdhb21 — Pcdhb21

Experimentally validated in Mouse; Orthology-inferred in Rat

Title

Journal:; Year Published:

Abstract

Single-cell identity generated by combinatorial homophilic interactions between α, β, and γ protocadherins.

Cell, 2014; PubMed, Mus Musculus Pcdhb21 — Mus Musculus Pcdhb21
ABSTRACT: Individual mammalian neurons stochastically express distinct repertoires of α, β, and γ protocadherin (Pcdh) proteins, which function in neural circuit assembly. We report that all three subfamilies of clustered Pcdhs can engage in specific homophilic interactions, that cell surface delivery of Pcdhα isoforms requires cis interactions with other Pcdhs, and that the extracellular cadherin domain EC6 plays a critical role in this process. Examination of homophilic interactions between specific combinations of multiple Pcdh isoforms revealed that Pcdh combinatorial recognition specificities depend on the identity of all of the expressed isoforms. A single mismatched Pcdh isoform can interfere with these combinatorial homophilic interactions. A theoretical analysis reveals that assembly of Pcdh isoforms into multimeric recognition units and the observed tolerance for mismatched isoforms can generate cell surface diversity sufficient for single-cell identity. However, the competing demands of nonself discrimination and self-recognition place limitations on the mechanisms by which homophilic recognition units can function.
Basic Information on Pcdhb21
Ligand Name: protocadherin beta 21
Other Symbols: Pcdhb18, PcdhbU
Ligand Location: cell membrane based on perplexity, uniprot
Ensembl Gene Symbol Report: Pcdhb21 (not in the official report)
MGI: Pcdhb21
NCBI: Pcdhb21
Functional Annotations for Pcdhb21
Gene Ontologies: Mouse Genome Informatics, quickGO

Expression Profile: Expression Atlas (RNA) (no ensemble gene id), GEO (RNA and protein), Allen Brain Atlas (RNA), Mouse Cell Atlas 1.1 (RNA)
Disease Annotations: MalaCards (Mouse-specific), AI summary (LLM)
Interactions with other Receptors for Pcdhb21
Basic Information on Pcdhb21
Receptor Name: protocadherin beta 21
Other Symbols: Pcdhb18, PcdhbU
Receptor Location: cell membrane based on perplexity, uniprot
Ensembl Gene Symbol Report: Pcdhb21 (not in the official report)
MGI: Pcdhb21
NCBI: Pcdhb21
Functional Annotations for Pcdhb21
Gene Ontologies: Mouse Genome Informatics, quickGO

Expression Profile: Expression Atlas (RNA) (no ensemble gene id), GEO (RNA and protein), Allen Brain Atlas (RNA), Mouse Cell Atlas 1.1 (RNA)
Disease Annotations: MalaCards (Mouse-specific), AI summary (LLM)
Interactions with other Ligands for Pcdhb21